卷积神经网络（CNN）已被证明在肺结核检测领域非常有效。但是，现有的基于CNN的肺结核检测方法缺乏捕获长期依赖性的能力，这对于全局信息提取至关重要。在计算机视觉任务中，非本地操作已被广泛使用，但是对于3D计算机断层扫描（CT）图像，计算成本可能很高。为了解决这个问题，我们提出了一个长的短切片网络（LSSANET），用于检测肺结核。特别是，我们开发了一种称为长短切片组（LSSG）的新的非本地机制，该机制将紧凑的非本地嵌入分裂为一个短距离切片，分组为一和长距离切片。这不仅减轻了计算负担，而且还可以在切片和整个功能图中保持长期依赖性。提出的LSSG易于使用，可以插入许多肺结核检测网络中。为了验证LSSANET的性能，我们将基于2D/3D CNN的几种最近提出的竞争检测方法进行比较。大规模PN9数据集的有希望的评估结果证明了我们方法的有效性。代码在https://github.com/ruixxxx/lssanet上。

3D肺部片段的重建在肺癌的外科治疗计划中起着重要作用，这有助于保存肺功能并有助于确保低复发率。但是，在深度学习时代，肺部段的自动重建仍未得到探索。在本文中，我们研究了是什么使肺部段自动重建。首先，我们在临床和几何上表达了肺部段的解剖学定义，并提出了遵守这些定义的评估指标。其次，我们提出了脉冲（隐式肺部段），这是一种旨在肺部段重建的深层隐式表面模型。通过脉冲自动重建肺部段的指标和视觉吸引力是准确的。与规范分割方法相比，冲动输出连续预测任意分辨率具有较高的训练效率和更少的参数。最后，我们尝试不同的网络输入，以分析肺部段重建任务中重要的事情。我们的代码可在https://github.com/m3dv/impulse上找到。

Inspired by the recent success of Transformers for Natural Language Processing and vision Transformer for Computer Vision, many researchers in the medical imaging community have flocked to Transformer-based networks for various main stream medical tasks such as classification, segmentation, and estimation. In this study, we analyze, two recently published Transformer-based network architectures for the task of multimodal head-and-tumor segmentation and compare their performance to the de facto standard 3D segmentation network - the nnU-Net. Our results showed that modeling long-range dependencies may be helpful in cases where large structures are present and/or large field of view is needed. However, for small structures such as head-and-neck tumor, the convolution-based U-Net architecture seemed to perform well, especially when training dataset is small and computational resource is limited.

Recent advances in neural radiance fields have enabled the high-fidelity 3D reconstruction of complex scenes for novel view synthesis. However, it remains underexplored how the appearance of such representations can be efficiently edited while maintaining photorealism. In this work, we present PaletteNeRF, a novel method for photorealistic appearance editing of neural radiance fields (NeRF) based on 3D color decomposition. Our method decomposes the appearance of each 3D point into a linear combination of palette-based bases (i.e., 3D segmentations defined by a group of NeRF-type functions) that are shared across the scene. While our palette-based bases are view-independent, we also predict a view-dependent function to capture the color residual (e.g., specular shading). During training, we jointly optimize the basis functions and the color palettes, and we also introduce novel regularizers to encourage the spatial coherence of the decomposition. Our method allows users to efficiently edit the appearance of the 3D scene by modifying the color palettes. We also extend our framework with compressed semantic features for semantic-aware appearance editing. We demonstrate that our technique is superior to baseline methods both quantitatively and qualitatively for appearance editing of complex real-world scenes.

By transferring knowledge from large, diverse, task-agnostic datasets, modern machine learning models can solve specific downstream tasks either zero-shot or with small task-specific datasets to a high level of performance. While this capability has been demonstrated in other fields such as computer vision, natural language processing or speech recognition, it remains to be shown in robotics, where the generalization capabilities of the models are particularly critical due to the difficulty of collecting real-world robotic data. We argue that one of the keys to the success of such general robotic models lies with open-ended task-agnostic training, combined with high-capacity architectures that can absorb all of the diverse, robotic data. In this paper, we present a model class, dubbed Robotics Transformer, that exhibits promising scalable model properties. We verify our conclusions in a study of different model classes and their ability to generalize as a function of the data size, model size, and data diversity based on a large-scale data collection on real robots performing real-world tasks. The project's website and videos can be found at robotics-transformer.github.io

Causal inference is the process of using assumptions, study designs, and estimation strategies to draw conclusions about the causal relationships between variables based on data. This allows researchers to better understand the underlying mechanisms at work in complex systems and make more informed decisions. In many settings, we may not fully observe all the confounders that affect both the treatment and outcome variables, complicating the estimation of causal effects. To address this problem, a growing literature in both causal inference and machine learning proposes to use Instrumental Variables (IV). This paper serves as the first effort to systematically and comprehensively introduce and discuss the IV methods and their applications in both causal inference and machine learning. First, we provide the formal definition of IVs and discuss the identification problem of IV regression methods under different assumptions. Second, we categorize the existing work on IV methods into three streams according to the focus on the proposed methods, including two-stage least squares with IVs, control function with IVs, and evaluation of IVs. For each stream, we present both the classical causal inference methods, and recent developments in the machine learning literature. Then, we introduce a variety of applications of IV methods in real-world scenarios and provide a summary of the available datasets and algorithms. Finally, we summarize the literature, discuss the open problems and suggest promising future research directions for IV methods and their applications. We also develop a toolkit of IVs methods reviewed in this survey at https://github.com/causal-machine-learning-lab/mliv.

The success of deep learning is partly attributed to the availability of massive data downloaded freely from the Internet. However, it also means that users' private data may be collected by commercial organizations without consent and used to train their models. Therefore, it's important and necessary to develop a method or tool to prevent unauthorized data exploitation. In this paper, we propose ConfounderGAN, a generative adversarial network (GAN) that can make personal image data unlearnable to protect the data privacy of its owners. Specifically, the noise produced by the generator for each image has the confounder property. It can build spurious correlations between images and labels, so that the model cannot learn the correct mapping from images to labels in this noise-added dataset. Meanwhile, the discriminator is used to ensure that the generated noise is small and imperceptible, thereby remaining the normal utility of the encrypted image for humans. The experiments are conducted in six image classification datasets, consisting of three natural object datasets and three medical datasets. The results demonstrate that our method not only outperforms state-of-the-art methods in standard settings, but can also be applied to fast encryption scenarios. Moreover, we show a series of transferability and stability experiments to further illustrate the effectiveness and superiority of our method.

Machine learning (ML) is revolutionizing protein structural analysis, including an important subproblem of predicting protein residue contact maps, i.e., which amino-acid residues are in close spatial proximity given the amino-acid sequence of a protein. Despite recent progresses in ML-based protein contact prediction, predicting contacts with a wide range of distances (commonly classified into short-, medium- and long-range contacts) remains a challenge. Here, we propose a multiscale graph neural network (GNN) based approach taking a cue from multiscale physics simulations, in which a standard pipeline involving a recurrent neural network (RNN) is augmented with three GNNs to refine predictive capability for short-, medium- and long-range residue contacts, respectively. Test results on the ProteinNet dataset show improved accuracy for contacts of all ranges using the proposed multiscale RNN+GNN approach over the conventional approach, including the most challenging case of long-range contact prediction.

We present Fast Language-Image Pre-training (FLIP), a simple and more efficient method for training CLIP. Our method randomly masks out and removes a large portion of image patches during training. Masking allows us to learn from more image-text pairs given the same wall-clock time and contrast more samples per iteration with similar memory footprint. It leads to a favorable trade-off between accuracy and training time. In our experiments on 400 million image-text pairs, FLIP improves both accuracy and speed over the no-masking baseline. On a large diversity of downstream tasks, FLIP dominantly outperforms the CLIP counterparts trained on the same data. Facilitated by the speedup, we explore the scaling behavior of increasing the model size, data size, or training length, and report encouraging results and comparisons. We hope that our work will foster future research on scaling vision-language learning.

The data consistency for the physical forward model is crucial in inverse problems, especially in MR imaging reconstruction. The standard way is to unroll an iterative algorithm into a neural network with a forward model embedded. The forward model always changes in clinical practice, so the learning component's entanglement with the forward model makes the reconstruction hard to generalize. The proposed method is more generalizable for different MR acquisition settings by separating the forward model from the deep learning component. The deep learning-based proximal gradient descent was proposed to create a learned regularization term independent of the forward model. We applied the one-time trained regularization term to different MR acquisition settings to validate the proposed method and compared the reconstruction with the commonly used $\ell_1$ regularization. We showed ~3 dB improvement in the peak signal to noise ratio, compared with conventional $\ell_1$ regularized reconstruction. We demonstrated the flexibility of the proposed method in choosing different undersampling patterns. We also evaluated the effect of parameter tuning for the deep learning regularization.